If you are looking for organic and vegan food in Tokyo, this post will be extremely helpful. We stayed in Tokyo for almost 3 month and spend a ton of time exploring all the organic options available, just like we always do. You will find pics with prices, I also have an extra price post for a quick overview for organic fruit and natural beauty products.

Compared to bigger European and Northern American cities, the availability of organic produce in Tokyo is not impressive. Considering the size of the city, there are just a few organic store chains with a handful of stores located in the city center. We stayed in Shibuya with the highest density of organic stores to choose from. Luckily, some small and bigger food stores all over the city had at least some organic products in stock. There are also delivery services offering organic produce and dry goods. The farmers markets were not a great option for organic produce sadly.

The Organic label/seal to look for in Japan:

Certified products are manufactured/grown in accordance with organic JAS Standards

Organic Supermarkets

Bio c’ Bon

An organic and natural store chain we new from Paris. Lots of European products. A great fruit selection. Mostly organic products. Beauty and skin care products. Check their website and Facebook page for more locations and opening hours or just google the store.

Bio c’ Bon Gaien-nishi-dori
Gaien-nishi-dori, 3 Chome-42-2 Jingumae, Shibuya City, Tokyo 150-0001, Japan

Bio C Bon Tomigaya
ビオセボン(Bio c’ Bon)富ヶ谷店
1 Chome-49-番21号 Tomigaya, Shibuya City, Tokyo 151-0063, Japan

Bio c’ Bon Nakameguro
Japan, 〒153-0051 Tokyo, Meguro City, Kamimeguro, 1 Chome−26−2 中目黒アトラスタワー内

Bio c’ Bon Azabujuban Shop
Japan, 〒106-0045 Tokyo, Minato City, Azabujuban, 2 Chome−9−2 １階

Natural House

Natural House was our favorite go to store as it was pretty much the closest and even not a huge store, it was packed with fresh produce, dry goods, and natural skin care products.

Natural House 共同ビル（青山）
3 Chome-6-18 Kitaaoyama, Minato City, Tokyo 107-0061, Japan

Natural House Ayoma
in the Tokyu Store Futako Tamagawa Rise Store
2 Chome-21-1 Tamagawa, Setagaya City, Tokyo 158-0094, Japan

Natural House ナチュラルハウス
in PARCO_ya Ueno
Japan, 〒110-0005 Tokyo, Taito City, Ueno, 3 Chome−24−6 フロンティアタワ 4階

No produce. Small Stool.

Crayon House

Crayon House is more than a store and this is probably why we went there so often. The food floor is not too huge, but we could get all the necessity. There is a beautiful outside sitting area, great selection of beauty products and a whole floor with sustainable toys for kids. The whole store is surrounded by sweet smelling flowers, a beautiful oasis.

Crayon House クレヨンハウス 東京店
3 Chome-8-15 Kitaaoyama, Minato City, Tokyo 107-0061, Japan

More Natural Markets

These, we visited once or twice.

Natural Mart 広尾商店街振興組合事務所
Japan, 〒150-0012 Tokyo, Shibuya City, Hiroo, 5 Chome−1

Ohsawa
Japan, 2 Chome-23-1 Yoyogi, Shibuya City, Tokyo 151-0053, Japan

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Bonraspail in SEIBU SHINJUKU PePe
1 Chome-30-1 Kabukicho, Shinjuku City, Tokyo 160-0021, Japan

Organic at regular and specialty Stores

SEIJO ISHII Tomigaya
Japan, 〒151-0063 Tokyo, Shibuya City, Tomigaya, 1 Chome−9−16 代々木コーポ 1F

atré Shinagawa
2 Chome-18-1 Konan, Minato City, Tokyo 108-0075, Japan

Isetan Shinjuku
3 Chome-14-1 Shinjuku, Shinjuku City, Tokyo 160-0022, Japan

Shibuya Hikarie
Hikarie, 2-chōme-21-1 Shibuya, Shibuya City, Tōkyō-to 150-8510, Japan

Precce Premium Tokyo Midtown and a store nearby
Japan, 〒107-0052 Tokyo, Minato City, Akasaka, 9 Chome−7−4 東京ミッドタウン ガーデンサイド地下

Nissin World Delicatessen
2 Chome-32-13 Higashiazabu, Minato City, Tokyo 106-0044, Japan

At a random Lawsons

Organic at farmers’ Markets

There is almost nothing certified organic, but it might be worth it talking to the farmers to find out who grows the produce organically or spray free.
Aoyama Farmers Market / UNU Farmers market
Japan, 5 Chome-53-70 Jingumae, Shibuya City, Tokyo 150-0001

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